Species and genomes
Table 1. EPIC species & genomes overview
| Species | Name | Latin name | Genome size (bp) | Num. of contigs (longer than 100kb) | Genome URL | RepeatMasker URL | Effective genome size (post rep.mask) | Class balance (classification) | GC% | base pairs in Training data | base pairs in Test data |
|---|---|---|---|---|---|---|---|---|---|---|---|
ilPloInte3.2 |
Indianmeal moth | Plodia interpunctella | GCF_027563975.2 | RepeatMasker | |||||||
cgigas_uk_roslin_v1 |
Pacific oyster | Magallana gigas | GCF_902806645.1 | RepeatMasker | |||||||
Ofas_2.0 |
Large milkweed bug | Oncopeltus fasciatus | GCA_000696205.2 | RepeatMasker | |||||||
sSquSuc5.hap2 |
Pacific spiny dogfish | Squalus suckleyi | GCA_050613895.1 | RepeatMasker | |||||||
ASM119413v2 |
California two-spot octopus | Octopus bimaculoides | GCF_001194135.2 | RepeatMasker |